Education/CredentialsPostdoctorate: Children’s Hospital Medical CenterDoctoral Degree: Tver State UniversityMaster's Degree: Mari State University Contact Information Email porollay@ucmail.uc.edu Peer Reviewed Publications Albee, Aaron W; Sayson, Steven G; Ashbaugh, Alan; Wolf, Nicholas J; Porollo, Aleksey; Smulian, George; Cushion, Melanie T 2025. Single-cell RNA sequencing defines developmental progression and reproductive transitions of Pneumocystis carinii. Microbiology spectrum, 13 10, e0127725Tran, Chau; Khadkikar, Siddharth; Porollo, Aleksey 2023. Survey of Protein Sequence Embedding Models. International journal of molecular sciences, 24 4, Van Camp, Pieter-Jan; Prasath, V B Surya; Haslam, David B; Porollo, Aleksey 2023. MGS2AMR: a gene-centric mining of metagenomic sequencing data for pathogens and their antimicrobial resistance profile. Microbiome, 11 1, 223Van Camp, Pieter-Jan; Haslam, David B; Porollo, Aleksey 2020. Prediction of Antimicrobial Resistance in Gram-Negative Bacteria From Whole-Genome Sequencing Data. Frontiers in microbiology, 11 , 1013Baker, Frazier N; Porollo, Aleksey 2016. CoeViz: a web-based tool for coevolution analysis of protein residues. BMC bioinformatics, 17 , 119Porollo, Aleksey; Meller, Jarosław 2007. Prediction-based fingerprints of protein-protein interactions. Proteins, 66 3, 630-45Porollo A, Sesterhenn TM, Collins MS, Welge JA, Cushion MT. 11-2014. Comparative genomics of pneumocystis species suggests the absence of genes for myo-inositol synthesis and reliance on inositol transport and metabolism. MBio., 5 6, e01834
Peer Reviewed Publications Albee, Aaron W; Sayson, Steven G; Ashbaugh, Alan; Wolf, Nicholas J; Porollo, Aleksey; Smulian, George; Cushion, Melanie T 2025. Single-cell RNA sequencing defines developmental progression and reproductive transitions of Pneumocystis carinii. Microbiology spectrum, 13 10, e0127725Tran, Chau; Khadkikar, Siddharth; Porollo, Aleksey 2023. Survey of Protein Sequence Embedding Models. International journal of molecular sciences, 24 4, Van Camp, Pieter-Jan; Prasath, V B Surya; Haslam, David B; Porollo, Aleksey 2023. MGS2AMR: a gene-centric mining of metagenomic sequencing data for pathogens and their antimicrobial resistance profile. Microbiome, 11 1, 223Van Camp, Pieter-Jan; Haslam, David B; Porollo, Aleksey 2020. Prediction of Antimicrobial Resistance in Gram-Negative Bacteria From Whole-Genome Sequencing Data. Frontiers in microbiology, 11 , 1013Baker, Frazier N; Porollo, Aleksey 2016. CoeViz: a web-based tool for coevolution analysis of protein residues. BMC bioinformatics, 17 , 119Porollo, Aleksey; Meller, Jarosław 2007. Prediction-based fingerprints of protein-protein interactions. Proteins, 66 3, 630-45Porollo A, Sesterhenn TM, Collins MS, Welge JA, Cushion MT. 11-2014. Comparative genomics of pneumocystis species suggests the absence of genes for myo-inositol synthesis and reliance on inositol transport and metabolism. MBio., 5 6, e01834
Albee, Aaron W; Sayson, Steven G; Ashbaugh, Alan; Wolf, Nicholas J; Porollo, Aleksey; Smulian, George; Cushion, Melanie T 2025. Single-cell RNA sequencing defines developmental progression and reproductive transitions of Pneumocystis carinii. Microbiology spectrum, 13 10, e0127725Tran, Chau; Khadkikar, Siddharth; Porollo, Aleksey 2023. Survey of Protein Sequence Embedding Models. International journal of molecular sciences, 24 4, Van Camp, Pieter-Jan; Prasath, V B Surya; Haslam, David B; Porollo, Aleksey 2023. MGS2AMR: a gene-centric mining of metagenomic sequencing data for pathogens and their antimicrobial resistance profile. Microbiome, 11 1, 223Van Camp, Pieter-Jan; Haslam, David B; Porollo, Aleksey 2020. Prediction of Antimicrobial Resistance in Gram-Negative Bacteria From Whole-Genome Sequencing Data. Frontiers in microbiology, 11 , 1013Baker, Frazier N; Porollo, Aleksey 2016. CoeViz: a web-based tool for coevolution analysis of protein residues. BMC bioinformatics, 17 , 119Porollo, Aleksey; Meller, Jarosław 2007. Prediction-based fingerprints of protein-protein interactions. Proteins, 66 3, 630-45Porollo A, Sesterhenn TM, Collins MS, Welge JA, Cushion MT. 11-2014. Comparative genomics of pneumocystis species suggests the absence of genes for myo-inositol synthesis and reliance on inositol transport and metabolism. MBio., 5 6, e01834